Biophysics and the Challenges of Emerging Threats

Single-molecule techniques eliminate ensemble averaging, thus revealing transient or rare species in heterogeneous systems [1 3]. These approaches have been employed to probe myriad biological phenomena, including protein and RNA folding [4 6], enzyme kinetics [7, 8], and even protein biosynthesis [...

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Tác giả chính: Puglisi, Joseph D. (Giám đốc xuất bản)
Định dạng: Livre numérique
Ngôn ngữ:Anglais
Được phát hành: Dordrecht : Springer Netherlands [20..].
Cham : Springer Nature
Phiên bản:1st ed. 2009.
Loạt:NATO Science for Peace and Security Series B: Physics and Biophysics
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Variante du titre:Proceedings of the NATO Advanced Study Institute on Biophysics and the Challenges of Emerging Threats Erice, Sicily, Italy 19-30 June 2007
Edition sous un autre format:• Biophysics and the challenges of emerging threats, [proceedings of the NATO advanced study institute on Biophysics and the challenges of emerging threats, Erice, Scily, Italy, 19-30 june 2007], edited by Joseph D. Puglisi, Dordrecht, Springer, 2009, 1 vol. (VII-179 p.), NATO science for peace and security series, 978-90-481-2366-7
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505 1 |a A Simple Model for Protein Folding Complementarity of Hydrophobic/Hydrophilic Properties In Protein Ligand Complexes: A New Tool to Improve Docking Results Structures of Cvnh Family Lectins Biophysical Approaches To Study Dna Base Flipping The Diversity of Nuclear Magnetic Resonance Spectroscopy Improved Dye Stability in Single-Molecule Fluorescence Experiments The Evaluation of Isotope Editing and Filtering for Protein Ligand Interaction Elucidation by Nmr Ribosome: an Ancient Cellular Nano-Machine for Genetic Code Translation 
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520 |a Single-molecule techniques eliminate ensemble averaging, thus revealing transient or rare species in heterogeneous systems [1 3]. These approaches have been employed to probe myriad biological phenomena, including protein and RNA folding [4 6], enzyme kinetics [7, 8], and even protein biosynthesis [1, 9, 10]. In particular, immobilization-based fluorescence te- niques such as total internal reflection fluorescence microscopy (TIRF-M) have recently allowed for the observation of multiple events on the millis- onds to seconds timescale [11 13]. Single-molecule fluorescence methods are challenged by the instability of single fluorophores. The organic fluorophores commonly employed in single-molecule studies of biological systems display fast photobleaching, intensity fluctuations on the millisecond timescale (blinking), or both. These phenomena limit observation time and complicate the interpretation of fl- rescence fluctuations [14, 15]. Molecular oxygen (O) modulates dye stability. Triplet O efficiently 2 2 quenches dye triplet states responsible for blinking. This results in the for- tion of singlet oxygen [16 18]. Singlet O reacts efficiently with organic dyes, 2 amino acids, and nucleobases [19, 20]. Oxidized dyes are no longer fluor- cent; oxidative damage impairs the folding and function of biomolecules. In the presence of saturating dissolved O , blinking of fluorescent dyes is sup- 2 pressed, but oxidative damage to dyes and biomolecules is rapid. Enzymatic O -scavenging systems are commonly employed to ameliorate dye instability. 2 Small molecules are often employed to suppress blinking at low O levels 
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