Emergent Computation : Emphasizing Bioinformatics

Emergent Computation is concerned with recent applications of Mathematical Linguistics or Automata Theory. This subject has a primary focus upon "Bioinformatics" (the Genome and arising interest in the Proteome), but the closing chapter also examines applications in Biology, Medicine, Anth...

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Xehetasun bibliografikoak
Egile nagusia: Simon, Matthew
Formatua: Livre numérique
Hizkuntza:Anglais
Argitaratua: New York, NY : Springer New York [20..].
Cham : Springer Nature
Edizioa:1st ed. 2005.
Saila:Biological and Medical Physics Biomedical Engineering
Sarrera elektronikoa:Accès sur la plateforme de l'éditeur
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Oharra: Archives Springer e-books (Licence nationale)
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Edition sous un autre format:• Emergent Computation, Texte imprimé, 9780387501413
• Emergent Computation, Texte imprimé, 9781441919632
• Emergent computation, emphasizing bioinformatics, Matthew Simon, [New York], AIP Press, Springer, 2005, 1 vol. (XIV-423 p.), Biological and medical physics, biomedical engineering, 0-387-22046-1
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505 1 |a Emergent Computation: Bioinformatics A Review of Chemistry A Review of Aspects of Automata Theory The Beginning Numbers Regular Languages: DNA and RNA Context-Free Languages: DNA and RNA Context-Sensitive Languages: DNA, RNA, Proteins Turing Machines and Sub-Turing Machines Splicing Systems, H Systems tRNA Structure Semigroups and Bioinformatics Automata Theory and Disciplines Other than Bioinformatics Automata Theory: Non-Bioinformatics Emergent Computation. 
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506 |a Conditions particulières de réutilisation pour les bénéficiaires des licences nationales. https://www.licencesnationales.fr/springer-nature-ebooks-contrat-licence-ln-2017 
520 |a Emergent Computation is concerned with recent applications of Mathematical Linguistics or Automata Theory. This subject has a primary focus upon "Bioinformatics" (the Genome and arising interest in the Proteome), but the closing chapter also examines applications in Biology, Medicine, Anthropology, etc. The book is composed of an organized examination of DNA, RNA, and the assembly of amino acids into proteins. Rather than examine these areas from a purely mathematical viewpoint (that excludes much of the biochemical reality), the author uses scientific papers written mostly by biochemists based upon their laboratory observations. Thus while DNA may exist in its double stranded form, triple stranded forms are not excluded. Similarly, while bases exist in Watson-Crick complements, mismatched bases and abasic pairs are not excluded, nor are Hoogsteen bonds. Just as there are four bases naturally found in DNA, the existence of additional bases is not ignored, nor amino acids in addition to the usual complement of 20. Can there be more than "64" possible codons? RNA is examined from the point of view of Nussinov plots. All information is presented from the point of view of regular, context-free, and context sensitive languages, as well as Turing machines and Sequential Machines (and their corresponding semi-groups). Relationships to other subjects of mathematics such as Complex numbers, Quaternions, Algebraic-Topology, and Knot Theory are also mentioned. An examination is made of Splicing Systems as well as Dominoes. Shortcomings illustrating the dangers of mathematical abstractions that ignore biochemistry are pointed out. The papers examine the subjects of interest from the point of view of applying language theory to search for new results, but also as biological-automatons (implementations or machines) to do calculations. This book will be of value to those studying Bioinformatics, Biochemistry, Computer-Science, Mathematical Linguistics, and Biology, as well as Pharmacology (with the possible promise of medically active artificial DNA, RNA, and proteins). Laboratory results to demonstrate the usefulness of the topics discussed are demonstrated both in vitro and in vivo. 
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